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WALCOM: Algorithms and Computation
This book constitutes the thoroughly refereed conference proceedings of the 9th International Workshop on Algorithms and Computation, WALCOM 2015, held in Dhaka, Bangladesh, in February 2015. The 26 revised full papers presented together with 3 invited talks were carefully reviewed and selected from 85 submissions. The papers are organized in topical sections on approximation algorithms, data structures and algorithms, computational geometry, combinatorial algorithms, distributed and online algorithms, graph drawing and algorithms, combinatorial problems and complexity, and graph enumeration and algorithms.
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Algorithms and Computation
This book constitutes the refereed proceedings of the 22nd International Symposium on Algorithms and Computation, ISAAC 2011, held in Yokohama, Japan in December 2011. The 76 revised full papers presented together with two invited talks were carefully reviewed and selected from 187 submissions for inclusion in the book. This volume contains topics such as approximation algorithms; computational geometry; computational biology; computational complexity; data structures; distributed systems; graph algorithms; graph drawing and information visualization; optimization; online and streaming algorithms; parallel and external memory algorithms; parameterized algorithms; game theory and internet algorithms; randomized algorithms; and string algorithms.
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Exercises in Computational Mathematics with MATLAB
Designed to provide tools for independent study, this book contains student-tested mathematical exercises joined with MATLAB programming exercises.Most chapters open with a review followed by theoretical and programming exercises, with detailed solutions provided for all problems including programs. Many of the MATLAB exercises are presented as Russian dolls: each question improves and completes the previous program and results are provided to validate the intermediate programs.The book offers useful MATLAB commands, advice on tables, vectors, matrices and basic commands for plotting. It contains material on eigenvalues and eigenvectors and important norms of vectors and matrices including perturbation theory; iterative methods for solving nonlinear and linear equations; polynomial and piecewise polynomial interpolation; Bézier curves; approximations of functions and integrals and more. The last two chapters considers ordinary differential equations including two point boundary value problems, and deal with finite difference methods for some partial differential equations.The format is designed to assist students working alone, with concise Review paragraphs, Math Hint footnotes on the mathematical aspects of a problem and MATLAB Hint footnotes with tips on programming.
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Guide to Graph Algorithms
This book A Guide to Graph Algorithms offers high-quality content in the research area of graph algorithms and explores the latest developments in graph algorithmics. The reader will gain a comprehensive understanding of how to use algorithms to explore graphs. It is a collection of texts that have proved to be trend setters and good examples of that. The book aims at providing the reader with a deep understanding of the structural properties of graphs that are useful for the design of efficient algorithms. These algorithms have applications in finite state machine modelling, social network theory, biology, and mathematics. The book contains many exercises, some up at present-day research-level. The exercises encourage the reader to discover new techniques by putting things in a clear perspective. A study of this book will provide the reader with many powerful tools to model and tackle problems in real-world scenarios.
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Combinatorial Algorithms
This book constitutes the thoroughly refereed post-workshop proceedings of the 25th International Workshop on Combinatorial Algorithms, IWOCA 2014, held in Duluth, MN, USA, in October 2014. The 32 revised full papers presented were carefully reviewed and selected from a total of 69 submissions. The papers focus on topics such as Algorithms and Data Structures, Combinatorial Enumeration, Combinatorial Optimization, Complexity Theory (Structural and Computational), Computational Biology, Databases (Security, Compression and Information Retrieval), Decompositions and Combinatorial Designs, Discrete and Computational Geometry, as well as Graph Drawing and Graph Theory. IWOCA is a yearly forum for researchers in designing algorithms field to advance creativeness of intersection between mathematics and computer science. This is the first time this conference is being held in U.S.
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Algorithms and Computation
This book constitutes the refereed proceedings of the 18th International Symposium on Algorithms and Computation, ISAAC 2007, held in Sendai, Japan, in December 2007. The 77 revised full papers presented together with two invited talks were carefully reviewed and selected from 220 submissions. The papers included topical sections on graph algorithms, computational geometry, complexity, graph drawing, distributed algorithms, optimization, data structure, and game theory.
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Design and Analysis of Algorithms
These are my lecture notes from CS681: Design and Analysis of Algo rithms, a one-semester graduate course I taught at Cornell for three consec utive fall semesters from '88 to '90. The course serves a dual purpose: to cover core material in algorithms for graduate students in computer science preparing for their PhD qualifying exams, and to introduce theory students to some advanced topics in the design and analysis of algorithms. The material is thus a mixture of core and advanced topics. At first I meant these notes to supplement and not supplant a textbook, but over the three years they gradually took on a life of their own. In addition to the notes, I depended heavily on the texts • A. V. Aho, J. E. Hopcroft, and J. D. Ullman, The Design and Analysis of Computer Algorithms. Addison-Wesley, 1975. • M. R. Garey and D. S. Johnson, Computers and Intractibility: A Guide to the Theory of NP-Completeness. w. H. Freeman, 1979. • R. E. Tarjan, Data Structures and Network Algorithms. SIAM Regional Conference Series in Applied Mathematics 44, 1983. and still recommend them as excellent references.
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Algorithms in Bioinformatics
Thoroughly Describes Biological Applications, Computational Problems, and Various Algorithmic Solutions Developed from the author’s own teaching material, Algorithms in Bioinformatics: A Practical Introduction provides an in-depth introduction to the algorithmic techniques applied in bioinformatics. For each topic, the author clearly details the biological motivation and precisely defines the corresponding computational problems. He also includes detailed examples to illustrate each algorithm and end-of-chapter exercises for students to familiarize themselves with the topics. Supplementary material is available at http://www.comp.nus.edu.sg/~ksung/algoinbioinfo/This classroom-tested textbook begins with basic molecular biology concepts. It then describes ways to measure sequence similarity, presents simple applications of the suffix tree, and discusses the problem of searching sequence databases. After introducing methods for aligning multiple biological sequences and genomes, the text explores applications of the phylogenetic tree, methods for comparing phylogenetic trees, the problem of genome rearrangement, and the problem of motif finding. It also covers methods for predicting the secondary structure of RNA and for reconstructing the peptide sequence using mass spectrometry. The final chapter examines the computational problem related to population genetics.
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Graphs, Networks and Algorithms
From the reviews of the previous editions ".... The book is a first class textbook and seems to be indispensable for everybody who has to teach combinatorial optimization. It is very helpful for students, teachers, and researchers in this area. The author finds a striking synthesis of nice and interesting mathematical results and practical applications. ... the author pays much attention to the inclusion of well-chosen exercises. The reader does not remain helpless; solutions or at least hints are given in the appendix. Except for some small basic mathematical and algorithmic knowledge the book is self-contained. ..." K.Engel, Mathematical Reviews 2002 The substantial development effort of this text, involving multiple editions and trailing in the context of various workshops, university courses and seminar series, clearly shows through in this new edition with its clear writing, good organisation, comprehensive coverage of essential theory, and well-chosen applications. The proofs of important results and the representation of key algorithms in a Pascal-like notation allow this book to be used in a high-level undergraduate or low-level graduate course on graph theory, combinatorial optimization or computer science algorithms. The well-worked solutions to exercises are a real bonus for self study by students. The book is highly recommended. P .B. Gibbons, Zentralblatt für Mathematik 2005 Once again, the new edition has been thoroughly revised. In particular, some further material has been added: more on NP-completeness (especially on dominating sets), a section on the Gallai-Edmonds structure theory for matchings, and about a dozen additional exercises – as always, with solutions. Moreover, the section on the 1-factor theorem has been completely rewritten: it now presents a short direct proof for the more general Berge-Tutte formula. Several recent research developments are discussed and quite a few references have been added.
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WALCOM: Algorithms and Computation
This book constitutes the proceedings of the 13th International Conference and Workshop on Algorithms and Computation, WALCOM 2019, held in Guwahati, India, in February/ March 2019.The 30 full papers presented were carefully reviewed and selected from 100 submissions. The papers are organized in topical headings on the facility location problem; computational geometry; graph drawing; graph algorithms; approximation algorithms; miscellaneous; data structures; parallel and distributed algorithms; and packing and covering.
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Beyond Databases, Architectures and Structures. Advanced Technologies for Data Mining and Knowledge Discovery
This book constitutes the refereed proceedings of the 12th International Conference entitled Beyond Databases, Architectures and Structures, BDAS 2016, held in Ustroń, Poland, in May/June 2016.It consists of 57 carefully reviewed papers selected from 152 submissions. The papers are organized in topical sections, namely artificial intelligence, data mining and knowledge discovery; architectures, structures and algorithms for efficient data processing; data warehousing and OLAP; natural language processing, ontologies and semantic Web; bioinformatics and biomedical data analysis; data processing tools; novel applications of database systems.
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Experimental Algorithms
This book constitutes the refereed proceedings of the 15th International Symposium on Experimental Algorithms, SEA 2016, held in St. Petersburg, Russia, in June 2016.The 25 revised full papers presented were carefully reviewed and selected from 54 submissions. The main theme of the symposium is the role of experimentation and of algorithm engineering techniques in the design and evaluation of algorithms and data structures. SEA covers a wide range of topics in experimental algorithmics, bringing together researchers from algorithm engineering, mathematical programming, and combinatorial optimization communities.
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Accurate Numerical Algorithms
The ESPRIT Project 1072, DIAMOND (Development and Integration of Accurate Mathematical Operations in Numerical Data-Processing) was carried out from January 1986 through April 1989 by the five partners Siemens Miinchen (prime contractor), CWI Amsterdam, University of Karlsruhe (Institut fiir Ange wandte Mathematik), NAG Oxford and University of Bath (subcontractor to NAG). The technical work was divided into three main work packages with one additional work package for miscellaneous topics. The major goals of this project, according to its title, were to develop a set of accurate numerical algorithms (work package 3) and to provide tools to support their implementation by means of an embedding of accurate arithmetic into programming languages (work package 1) and by transform ation techniques which either improve the accuracy of expression evaluation or detect and eliminate presumable deficiencies in accuracy in existing programs (work package 2). A great variety of working papers describing and discussing the results of these work packages have been written during the collaboration of the project. This book (Accurate Numericlll A 19oritltms) mainly summarizes the results of work package 3, carried through by the two partners Karlsruhe University and NAG Oxford under the leadership of the editors and Dr. G. S. Hodgson. Another book (Improving Floating-Point Programming, J. Tliley, to appear 1989), edited by P.J.L. Wallis, which is one of the DIAMOND project's final deliverables, concentrates more on the fundamental tools.
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Algorithms for Graphics and Image Processing
The technological developments of the last ten years have made com puter graphics and image processing by computer popular. Pictorial pat tern recognition has also shown significant progress. Clearly, there exist overlapping interests among the three areas of research. Graphic displays are of concern to anyone involved in image processing or pic torial pattern recognition and many problems in graphics require methodologies from image processing for their solutions. The data structures used in all three areas are similar. It seems that there is a common body of knowledge underlying all three areas, pictorial informa tion processing by computer. The novelty of these fields makes it difficult to design a course or to a write a book covering their basic concepts. Some of the treatises on graphics focus on the hardware and methods of current interest while treatises on image processing often emphasize applications and classical signal processing. The fast evolution of technology causes such material to lose its relevance. For example, the development of optical fibers has reduced the importance of bandwidth compression.
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Tools and Algorithms for the Construction and Analysis of Systems
This book is Open Access under a CC BY licence.The LNCS 11427 and 11428 proceedings set constitutes the proceedings of the 25th International Conference on Tools and Algorithms for the Construction and Analysis of Systems, TACAS 2019, which took place in Prague, Czech Republic, in April 2019, held as part of the European Joint Conferences on Theory and Practice of Software, ETAPS 2019.The total of 42 full and 8 short tool demo papers presented in these volumes was carefully reviewed and selected from 164 submissions. The papers are organized in topical sections as follows:Part I: SAT and SMT, SAT solving and theorem proving; verification and analysis; model checking; tool demo; and machine learning.Part II: concurrent and distributed systems; monitoring and runtime verification; hybrid and stochastic systems; synthesis; symbolic verification; and safety and fault-tolerant systems.
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Beyond Databases, Architectures and Structures. Facing the Challenges of Data Proliferation and Growing Variety
This book constitutes the refereed proceedings of the 14th International Conference entitled Beyond Databases, Architectures and Structures, BDAS 2018, held in Poznań, Poland, in September 2018, during the IFIP World Computer Congress.It consists of 38 carefully reviewed papers selected from 102 submissions. The papers are organized in topical sections, namely big data and cloud computing; architectures, structures and algorithms for efficient data processing; artificial intelligence, data mining and knowledge discovery; text mining, natural language processing, ontologies and semantic web; image analysis and multimedia mining.
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Compression and Coding Algorithms
Compression and Coding Algorithms describes in detail the coding mechanisms that are available for use in data compression systems. The well known Huffman coding technique is one mechanism, but there have been many others developed over the past few decades, and this book describes, explains and assesses them. People undertaking research of software development in the areas of compression and coding algorithms will find this book an indispensable reference. In particular, the careful and detailed description of algorithms and their implementation, plus accompanying pseudo-code that can be readily implemented on computer, make this book a definitive reference in an area currently without one.
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Compression and Coding Algorithms
Compression and Coding Algorithms describes in detail the coding mechanisms that are available for use in data compression systems. The well known Huffman coding technique is one mechanism, but there have been many others developed over the past few decades, and this book describes, explains and assesses them. People undertaking research of software development in the areas of compression and coding algorithms will find this book an indispensable reference. In particular, the careful and detailed description of algorithms and their implementation, plus accompanying pseudo-code that can be readily implemented on computer, make this book a definitive reference in an area currently without one.
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Power of Algorithms
To examine, analyze, and manipulate a problem to the point of designing an algorithm for solving it is an exercise of fundamental value in many fields. With so many everyday activities governed by algorithmic principles, the power, precision, reliability and speed of execution demanded by users have transformed the design and construction of algorithms from a creative, artisanal activity into a full-fledged science in its own right. This book is aimed at all those who exploit the results of this new science, as designers and as consumers. The first chapter is an overview of the related history, demonstrating the long development of ideas such as recursion and more recent formalizations such as computability. The second chapter shows how the design of algorithms requires appropriate techniques and sophisticated organization of data. In the subsequent chapters the contributing authors present examples from diverse areas – such as routing and networking problems, Web search, information security, auctions and games, complexity and randomness, and the life sciences – that show how algorithmic thinking offers practical solutions and also deepens domain knowledge. The contributing authors are top-class researchers with considerable academic and industrial experience; they are also excellent educators and communicators and they draw on this experience with enthusiasm and humor. This book is an excellent introduction to an intriguing domain and it will be enjoyed by undergraduate and postgraduate students in computer science, engineering, and mathematics, and more broadly by all those engaged with algorithmic thinking.
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Algorithms - ESA 2014
This book constitutes the refereed proceedings of the 22st Annual European Symposium on Algorithms, ESA 2014, held in Wrocław, Poland, in September 2014, as part of ALGO 2014. The 69 revised full papers presented were carefully reviewed and selected from 269 initial submissions: 57 out of 221 in Track A, Design and Analysis, and 12 out of 48 in Track B, Engineering and Applications. The papers present original research in the areas of design and mathematical analysis of algorithms; engineering, experimental analysis, and real-world applications of algorithms and data structures.
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Link Mining: Models, Algorithms, and Applications
With the recent ?ourishing research activities on Web search and mining, social networkanalysis,informationnetworkanalysis,informationretrieval,linkana- sis,andstructuraldatamining,researchonlinkmininghasbeenrapidlygrowing, forminganew?eldofdatamining. Traditionaldataminingfocuseson"?at"or"isolated"datainwhicheachdata objectisrepresentedasanindependentattributevector. However,manyreal-world data sets are inter-connected, much richer in structure, involving objects of h- erogeneoustypesandcomplexlinks. Hence,thestudyoflinkminingwillhavea highimpactonvariousimportantapplicationssuchasWebandtextmining,social networkanalysis,collaborative?ltering,andbioinformatics. Asanemergingresearch?eld,therearecurrentlynobooksfocusingonthetheory andtechniquesaswellastherelatedapplicationsforlinkmining,especiallyfrom aninterdisciplinarypointofview. Ontheotherhand,duetothehighpopularity oflinkagedata,extensiveapplicationsrangingfromgovernmentalorganizationsto commercial businesses to people's daily life call for exploring the techniques of mininglinkagedata.Therefore,researchersandpractitionersneedacomprehensive booktosystematicallystudy,furtherdevelop,andapplythelinkminingtechniques totheseapplications. Thisbookcontainscontributedchaptersfromavarietyofprominentresearchers inthe?eld. Whilethechaptersarewrittenbydifferentresearchers,thetopicsand contentareorganizedinsuchawayastopresentthemostimportantmodels,al- rithms,andapplicationsonlinkmininginastructuredandconciseway. Giventhe lackofstructurallyorganizedinformationonthetopicoflinkmining,thebookwill provideinsightswhicharenoteasilyaccessibleotherwise. Wehopethatthebook willprovideausefulreferencetonotonlyresearchers,professors,andadvanced levelstudentsincomputersciencebutalsopractitionersinindustry. Wewouldliketoconveyourappreciationtoallauthorsfortheirvaluablec- tributions. WewouldalsoliketoacknowledgethatthisworkissupportedbyNSF throughgrantsIIS-0905215,IIS-0914934,andDBI-0960443. Chicago,Illinois PhilipS. Yu Urbana-Champaign,Illinois JiaweiHan Pittsburgh,Pennsylvania ChristosFaloutsos v Contents Part I Link-Based Clustering 1 Machine Learning Approaches to Link-Based Clustering...3 Zhongfei(Mark)Zhang,BoLong,ZhenGuo,TianbingXu, andPhilipS.Yu 2 Scalable Link-Based Similarity Computation and Clustering...45 XiaoxinYin,JiaweiHan,andPhilipS. Yu 3 Community Evolution and Change Point Detection in Time-Evolving Graphs...73 JimengSun,SpirosPapadimitriou,PhilipS. Yu,andChristosFaloutsos Part II Graph Mining and Community Analysis 4 A Survey of Link Mining Tasks for Analyzing Noisy and Incomplete Networks...107 GalileoMarkNamata,HossamSharara,andLiseGetoor 5 Markov Logic: A Language and Algorithms for Link Mining...135 PedroDomingos,DanielLowd,StanleyKok,AniruddhNath,Hoifung Poon,MatthewRichardson,andParagSingla 6 Understanding Group Structures and Properties in Social Media...163 LeiTangandHuanLiu 7 Time Sensitive Ranking with Application to Publication Search...187 XinLi,BingLiu,andPhilipS. Yu 8 Proximity Tracking on
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Bioinformatics Algorithms
Presents algorithmic techniques for solving problems in bioinformatics, including applications that shed new light on molecular biology This book introduces algorithmic techniques in bioinformatics, emphasizing their application to solving novel problems in post-genomic molecular biology. Beginning with a thought-provoking discussion on the role of algorithms in twenty-first-century bioinformatics education, Bioinformatics Algorithms covers: General algorithmic techniques, including dynamic programming, graph-theoretical methods, hidden Markov models, the fast Fourier transform, seeding, and approximation algorithms Algorithms and tools for genome and sequence analysis, including formal and approximate models for gene clusters, advanced algorithms for non-overlapping local alignments and genome tilings, multiplex PCR primer set selection, and sequence/network motif finding Microarray design and analysis, including algorithms for microarray physical design, missing value imputation, and meta-analysis of gene expression data Algorithmic issues arising in the analysis of genetic variation across human population, including computational inference of haplotypes from genotype data and disease association search in case/control epidemiologic studies Algorithmic approaches in structural and systems biology, including topological and structural classification in biochemistry, and prediction of protein-protein and domain-domain interactions Each chapter begins with a self-contained introduction to a computational problem; continues with a brief review of the existing literature on the subject and an in-depth description of recent algorithmic and methodological developments; and concludes with a brief experimental study and a discussion of open research challenges. This clear and approachable presentation makes the book appropriate for researchers, practitioners, and graduate students alike.
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Combinatorial Algorithms
This book constitutes the refereed proceedings of the 33rd International Workshop on Combinatorial Algorithms, IWOCA 2022, which took place as a hybrid event in Trier, Germany, during June 7-9, 2022.The 35 papers presented in these proceedings were carefully reviewed and selected from 86 submissions. They deal with diverse topics related to combinatorial algorithms, such as algorithms and data structures; algorithmic and combinatorical aspects of cryptography and information security; algorithmic game theory and complexity of games; approximation algorithms; complexity theory; combinatorics and graph theory; combinatorial generation, enumeration and counting; combinatorial optimization; combinatorics of words; computational biology; computational geometry; decompositions and combinatorial designs; distributed and network algorithms; experimental combinatorics; fine-grained complexity; graph algorithms and modelling with graphs; graph drawing and graph labelling; network theory and temporal graphs; quantum computing and algorithms for quantum computers; online algorithms; parameterized and exact algorithms; probabilistic andrandomized algorithms; and streaming algorithms.
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